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Papers by Peer Bork

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  1. Spatiotemporal variation of mammalian protein complex stoichiometriesGenome biology · 2016
  2. Bacterial antisense RNAs are mainly the product of transcriptional noiseScience Advances · 2016
  3. ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic DataMolecular Biology and Evolution · 2016
  4. Gut Microbiota Linked to Sexual Preference and HIV InfectionEBioMedicine · 2016
  5. Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school childrenNature Communications · 2016
  6. Integration of multi-omics data of a genome-reduced bacterium: Prevalence of post-transcriptional regulation and its correlation with protein abundancesNucleic Acids Research · 2016
  7. The Combination of X-Ray Crystallography and Cryo-Electron Microscopy Provides Insight into the Overall Architecture of the Dodecameric Rvb1/Rvb2 ComplexPLoS ONE · 2016
  8. STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity dataNucleic Acids Research · 2015
  9. eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequencesNucleic Acids Research · 2015
  10. The SIDER database of drugs and side effectsNucleic Acids Research · 2015
  11. Operon structure and cotranslational subunit association direct protein assembly in bacteriaScience · 2015
  12. Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old RatsCell Systems · 2015
  13. Lipid Cooperativity as a General Membrane-Recruitment Principle for PH DomainsCell Reports · 2015
  14. Dietary Modulation of Gut Microbiota Contributes to Alleviation of Both Genetic and Simple Obesity in ChildrenEBioMedicine · 2015
  15. Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene StreamGenome Biology and Evolution · 2015
  16. Tara Oceans studies plankton at planetary scaleScience · 2015
  17. Structure and function of the global ocean microbiomeScience · 2015
  18. Eukaryotic plankton diversity in the sunlit oceanScience · 2015
  19. Determinants of community structure in the global plankton interactomeScience · 2015
  20. Environmental characteristics of Agulhas rings affect interocean plankton transportScience · 2015
  21. Patterns and ecological drivers of ocean viral communitiesScience · 2015
  22. Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungiMycoKeys · 2015
  23. Metabolic dependencies drive species co-occurrence in diverse microbial communitiesProceedings of the National Academy of Sciences · 2015
  24. Computational eco‐systems biology in Tara Oceans: translating data into knowledgeMolecular Systems Biology · 2015
  25. Inter-individual differences in the gene content of human gut bacterial speciesGenome biology · 2015
  26. Temporal and technical variability of human gut metagenomesGenome Biology · 2015
  27. Histone Deacetylase Inhibitors (HDACi) Cause the Selective Depletion of Bromodomain Containing Proteins (BCPs)Molecular & Cellular Proteomics · 2015
  28. Defining a minimal cell: essentiality of small ORF s and nc RNA s in a genome‐reduced bacteriumSHILAP Revista de lepidopterología · 2015
  29. Prokaryotic ancestry and gene fusion of a dual localized peroxiredoxin in malaria parasitesMicrobial Cell · 2015
  30. The InterPro protein families database: the classification resource after 15 yearsNucleic Acids Research · 2014
  31. An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilumNucleic Acids Research · 2014
  32. Mechismo: predicting the mechanistic impact of mutations and modifications on molecular interactionsNucleic Acids Research · 2014
  33. A Phylogeny-Based Benchmarking Test for Orthology Inference Reveals the Limitations of Function-Based ValidationPLoS ONE · 2014
  34. Potential of fecal microbiota for early‐stage detection of colorectal cancerMolecular Systems Biology · 2014
  35. PTMcode v2: a resource for functional associations of post-translational modifications within and between proteinsNucleic Acids Research · 2014
  36. STRING v10: protein–protein interaction networks, integrated over the tree of lifeNucleic Acids Research · 2014
  37. SMART: recent updates, new developments and status in 2015Nucleic Acids Research · 2014
  38. LotuS: an efficient and user-friendly OTU processing pipelineMicrobiome · 2014
  39. Detection of coding microsatellite frameshift mutations in DNA mismatch repair‐deficient mouse intestinal tumorsMolecular Carcinogenesis · 2014
  40. Novel Drug Candidates for the Treatment of Metastatic Colorectal Cancer through Global Inverse Gene-Expression ProfilingCancer Research · 2014
  41. Classification and quantification of bacteriophage taxa in human gut metagenomesThe ISME Journal · 2014
  42. Metagenomic insights into the human gut resistome and the forces that shape itBioEssays · 2014
  43. Structural analysis of protein‐ligand interactions: the binding of endogenous compounds and of synthetic drugsJournal of Molecular Recognition · 2014
  44. eggNOG v4.0: nested orthology inference across 3686 organismsNucleic Acids Research · 2013
  45. STITCH 4: integration of protein–chemical interactions with user dataNucleic Acids Research · 2013
  46. Metagenomic 16S rDNA I llumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communitiesEnvironmental Microbiology · 2013
  47. Human Monogenic Disease Genes Have Frequently Functionally Redundant ParalogsPLoS Computational Biology · 2013
  48. Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomesThe ISME Journal · 2013
  49. Country-specific antibiotic use practices impact the human gut resistomeGenome Research · 2013
  50. Consistent mutational paths predict eukaryotic thermostabilityBMC Evolutionary Biology · 2013