Synapse

← Peer Bork

Papers by Peer Bork

Page 6 · newest first

  1. Cell type‐specific nuclear pores: a case in point for context‐dependent stoichiometry of molecular machinesMolecular Systems Biology · 2013
  2. Characterization of drug‐induced transcriptional modules: towards drug repositioning and functional understandingMolecular Systems Biology · 2013
  3. Systematic identification of proteins that elicit drug side effectsMolecular Systems Biology · 2013
  4. Evolution and functional cross‐talk of protein post‐translational modificationsMolecular Systems Biology · 2013
  5. Orthologous Gene Clusters and Taxon Signature Genes for Viruses of ProkaryotesJournal of Bacteriology · 2012
  6. STRING v9.1: protein-protein interaction networks, with increased coverage and integrationNucleic Acids Research · 2012
  7. PTMcode: a database of known and predicted functional associations between post-translational modifications in proteinsNucleic Acids Research · 2012
  8. DvD: An R/Cytoscape pipeline for drug repurposing using public repositories of gene expression dataBioinformatics · 2012
  9. MOCAT: A Metagenomics Assembly and Gene Prediction ToolkitPLoS ONE · 2012
  10. Role for urea in nitrification by polar marine ArchaeaProceedings of the National Academy of Sciences · 2012
  11. Transcription start site associated RNAs in bacteriaMolecular Systems Biology · 2012
  12. Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighboursMolecular Systems Biology · 2012
  13. Annotation of the M. tuberculosis Hypothetical Orfeome: Adding Functional Information to More than Half of the Uncharacterized ProteinsPLoS ONE · 2012
  14. Cross‐talk between phosphorylation and lysine acetylation in a genome‐reduced bacteriumMolecular Systems Biology · 2012
  15. Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing DataSHILAP Revista de lepidopterología · 2012
  16. A 15q24 microdeletion in transient myeloproliferative disease (TMD) and acute megakaryoblastic leukaemia (AMKL) implicates PML and SUMO3 in the leukaemogenesis of TMD/AMKLBritish Journal of Haematology · 2012
  17. The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydratesThe ISME Journal · 2012
  18. Deciphering a global network of functionally associated post‐translational modificationsMolecular Systems Biology · 2012
  19. Prediction of Drug Combinations by Integrating Molecular and Pharmacological DataPLoS Computational Biology · 2011
  20. Identifying Single Copy Orthologs in MetazoaPLoS Computational Biology · 2011
  21. eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic rangesNucleic Acids Research · 2011
  22. InterPro in 2011: new developments in the family and domain prediction databaseNucleic Acids Research · 2011
  23. STITCH 3: zooming in on protein-chemical interactionsNucleic Acids Research · 2011
  24. OGEE: an online gene essentiality databaseNucleic Acids Research · 2011
  25. SMART 7: recent updates to the protein domain annotation resourceNucleic Acids Research · 2011
  26. A Holistic Approach to Marine Eco-Systems BiologyPLoS Biology · 2011
  27. Orthology prediction methods: A quality assessment using curated protein familiesBioEssays · 2011
  28. Universally Distributed Single-Copy Genes Indicate a Constant Rate of Horizontal TransferPLoS ONE · 2011
  29. Network Neighbors of Drug Targets Contribute to Drug Side-Effect SimilarityPLoS ONE · 2011
  30. iPath2.0: interactive pathway explorerNucleic Acids Research · 2011
  31. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easyNucleic Acids Research · 2011
  32. Toward molecular trait‐based ecology through integration of biogeochemical, geographical and metagenomic dataMolecular Systems Biology · 2011
  33. The Ecoresponsive Genome of Daphnia pulexScience · 2011
  34. A systematic screen for protein–lipid interactions in Saccharomyces cerevisiaeMolecular Systems Biology · 2010
  35. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scoredNucleic Acids Research · 2010
  36. SmashCell: a software framework for the analysis of single-cell amplified genome sequencesBioinformatics · 2010
  37. SmashCommunity: a metagenomic annotation and analysis toolBioinformatics · 2010
  38. Drug-Induced Regulation of Target ExpressionPLoS Computational Biology · 2010
  39. A network of conserved co-occurring motifs for the regulation of alternative splicingNucleic Acids Research · 2010
  40. Ontologies in Quantitative Biology: A Basis for Comparison, Integration, and DiscoveryPLoS Biology · 2010
  41. A human gut microbial gene catalogue established by metagenomic sequencingNature · 2010
  42. High-resolution transcription atlas of the mitotic cell cycle in budding yeastGenome biology · 2010
  43. Evolution and regulation of cellular periodic processes: a role for paraloguesEMBO Reports · 2010
  44. Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia SpeciesScience · 2010
  45. A side effect resource to capture phenotypic effects of drugsMolecular Systems Biology · 2010
  46. Proteome Organization in a Genome-Reduced BacteriumScience · 2009
  47. Impact of Genome Reduction on Bacterial Metabolism and Its RegulationScience · 2009
  48. Transcriptome Complexity in a Genome-Reduced BacteriumScience · 2009
  49. AQUA: automated quality improvement for multiple sequence alignmentsBioinformatics · 2009
  50. eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotationsNucleic Acids Research · 2009