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Papers by Peer Bork

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  1. STITCH 2: an interaction network database for small molecules and proteinsNucleic Acids Research · 2009
  2. SelTarbase, a database of human mononucleotide-microsatellite mutations and their potential impact to tumorigenesis and immunologyNucleic Acids Research · 2009
  3. Quantifying environmental adaptation of metabolic pathways in metagenomicsProceedings of the National Academy of Sciences · 2009
  4. Selective maintenance of Drosophilatandemly arranged duplicated genes during evolutionGenome biology · 2008
  5. Heat shock protein-90-alpha, a prolactin-STAT5 target gene identified in breast cancer cells, is involved in apoptosis regulationBreast Cancer Research · 2008
  6. Frameshift mutations in coding repeats of protein tyrosine phosphatase genes in colorectal tumors with microsatellite instabilityBMC Cancer · 2008
  7. SMART 6: recent updates and new developmentsNucleic Acids Research · 2008
  8. A Computational Screen for Type I Polyketide Synthases in Metagenomics Shotgun DataPLoS ONE · 2008
  9. STRING 8--a global view on proteins and their functional interactions in 630 organismsNucleic Acids Research · 2008
  10. InterPro: the integrative protein signature databaseNucleic Acids Research · 2008
  11. Discovering Functional Novelty in Metagenomes: Examples from Light-Mediated ProcessesJournal of Bacteriology · 2008
  12. Not Comparable, But ComplementaryScience · 2008
  13. Linear Motif Atlas for Phosphorylation-Dependent SignalingScience Signaling · 2008
  14. Drug Target Identification Using Side-Effect SimilarityScience · 2008
  15. A Molecular Study of Microbe Transfer between Distant EnvironmentsPLoS ONE · 2008
  16. Evolution of the phospho-tyrosine signaling machinery in premetazoan lineagesProceedings of the National Academy of Sciences · 2008
  17. Millimeter‐scale genetic gradients and community‐level molecular convergence in a hypersaline microbial matMolecular Systems Biology · 2008
  18. KEGG Atlas mapping for global analysis of metabolic pathwaysNucleic Acids Research · 2008
  19. Non-random retention of protein-coding overlapping genes in MetazoaBMC Genomics · 2008
  20. Large‐scale prediction of drug–target relationshipsFEBS Letters · 2008
  21. The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoansNature · 2008
  22. Large gene overlaps in prokaryotic genomes: result of functional constraints or mispredictions?BMC Genomics · 2008
  23. STITCH: interaction networks of chemicals and proteinsNucleic Acids Research · 2007
  24. NetworKIN: a resource for exploring cellular phosphorylation networksNucleic Acids Research · 2007
  25. SuperTarget and Matador: resources for exploring drug-target relationshipsNucleic Acids Research · 2007
  26. eggNOG: automated construction and annotation of orthologous groups of genesNucleic Acids Research · 2007
  27. Genome-Wide Experimental Determination of Barriers to Horizontal Gene TransferScience · 2007
  28. 4DXpress: a database for cross-species expression pattern comparisonsNucleic Acids Research · 2007
  29. Target-specific requirements for enhancers of decapping in miRNA-mediated gene silencingGenes & Development · 2007
  30. Quantitative assessment of protein function prediction from metagenomics shotgun sequencesProceedings of the National Academy of Sciences · 2007
  31. Evolution of Cell Cycle Control: Same Molecular Machines, Different RegulationCell Cycle · 2007
  32. Update of the G2D tool for prioritization of gene candidates to inherited diseasesNucleic Acids Research · 2007
  33. Quantitative Phylogenetic Assessment of Microbial Communities in Diverse EnvironmentsScience · 2007
  34. Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesisMolecular Systems Biology · 2007
  35. Prediction of effective genome size in metagenomic samplesGenome biology · 2007
  36. New developments in the InterPro databaseNucleic Acids Research · 2007
  37. STRING 7--recent developments in the integration and prediction of protein interactionsNucleic Acids Research · 2006
  38. Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotationBioinformatics · 2006
  39. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignmentsNucleic Acids Research · 2006
  40. mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexesGenes & Development · 2006
  41. Identification and Analysis of Genes and Pseudogenes within Duplicated Regions in the Human and Mouse GenomesPLoS Computational Biology · 2006
  42. Toward Automatic Reconstruction of a Highly Resolved Tree of LifeScience · 2006
  43. Comparative analysis of environmental sequences: potential and challengesPhilosophical Transactions of the Royal Society B Biological Sciences · 2006
  44. Identification and analysis of evolutionarily cohesive functional modules in protein networksGenome Research · 2006
  45. LSAT: learning about alternative transcripts in MEDLINEBioinformatics · 2006
  46. Vertebrate-Type Intron-Rich Genes in the Marine Annelid Platynereis dumeriliiScience · 2005
  47. Spore number control and breeding in Saccharomyces cerevisiaeThe Journal of Cell Biology · 2005
  48. Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targetsRNA · 2005
  49. Medusa: a simple tool for interaction graph analysisBioinformatics · 2005
  50. G2D: a tool for mining genes associated with diseaseBMC Genetics · 2005