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Papers by Peer Bork

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  1. Extraction of regulatory gene/protein networks from MedlineBioinformatics · 2005
  2. DCD – a novel plant specific domain in proteins involved in development and programmed cell deathBMC Bioinformatics · 2005
  3. Structural genomics of human proteins – target selection and generation of a public catalogue of expression clonesMicrobial Cell Factories · 2005
  4. Extraction of Transcript Diversity from Scientific LiteraturePLoS Computational Biology · 2005
  5. Comparative Metagenomics of Microbial CommunitiesScience · 2005
  6. Consistency of genome‐based methods in measuring Metazoan evolutionFEBS Letters · 2005
  7. Systematic Association of Genes to Phenotypes by Genome and Literature MiningPLoS Biology · 2005
  8. Complex genomic rearrangements lead to novel primate gene functionGenome Research · 2005
  9. Dynamic Complex Formation During the Yeast Cell CycleScience · 2005
  10. The WHy domain mediates the response to desiccation in plants and bacteriaComputer applications in the biosciences · 2004
  11. Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineagesGenome Research · 2004
  12. Gene expression profiling of the rat superior olivary complex using serial analysis of gene expressionEuropean Journal of Neuroscience · 2004
  13. Shared components of protein complexes—versatile building blocks or biochemical artefacts?BioEssays · 2004
  14. Comparison of computational methods for the identification of cell cycle-regulated genesBioinformatics · 2004
  15. Homology‐based functional proteomics by mass spectrometry: Application to the Xenopus microtubule‐associated proteomePROTEOMICS · 2004
  16. ArrayProspector: a web resource of functional associations inferred from microarray expression dataNucleic Acids Research · 2004
  17. Gene annotation from scientific literature using mappings between keyword systemsBioinformatics · 2004
  18. Structure-Based Assembly of Protein Complexes in YeastScience · 2004
  19. BLAST2GENE: a comprehensive conversion of BLAST output into independent genes and gene fragmentsBioinformatics · 2004
  20. RanBP2/Nup358 Provides a Major Binding Site for NXF1-p15 Dimers at the Nuclear Pore Complex and Functions in Nuclear mRNA ExportMolecular and Cellular Biology · 2004
  21. Functional clues for hypothetical proteins based on genomic context analysis in prokaryotesNucleic Acids Research · 2004
  22. The PAM domain, a multi-protein complex-associated module with an all-alpha-helix foldBMC Bioinformatics · 2003
  23. Genome evolution reveals biochemical networks and functional modulesProceedings of the National Academy of Sciences · 2003
  24. Alternative splicing and evolutionBioEssays · 2003
  25. A comprehensive set of protein complexes in yeast: mining large scale protein–protein interaction screensBioinformatics · 2003
  26. Information extraction from full text scientific articles: Where are the keywords?BMC Bioinformatics · 2003
  27. The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tractProceedings of the National Academy of Sciences · 2002
  28. Immunity-Related Genes and Gene Families in Anopheles gambiaeScience · 2002
  29. Comparative Genome and Proteome Analysis of Anopheles gambiae and Drosophila melanogasterScience · 2002
  30. NEAT: a domain duplicated in genes near the components of a putative Fe3+siderophore transporter from Gram-positive pathogenic bacteriaGenome biology · 2002
  31. Predicting Protein Cellular Localization Using a Domain Projection MethodGenome Research · 2002
  32. Comparative genomic analysis in the region of a major Plasmodium -refractoriness locus of Anopheles gambiaeProceedings of the National Academy of Sciences · 2002
  33. Computing Fuzzy Associations for the Analysis of Biological LiteratureBioTechniques · 2002
  34. The identification of functional modules from the genomic association of genesProceedings of the National Academy of Sciences · 2002
  35. Identification of attenuation and antitermination regulation in prokaryotesGenome biology · 2002
  36. A Versatile Structural Domain Analysis Server Using Profile Weight MatricesJournal of Chemical Information and Computer Sciences · 2002
  37. InterPro: An integrated documentation resource for protein families, domains and functional sitesBriefings in Bioinformatics · 2002
  38. Systematic Identification of Novel Protein Domain Families Associated with Nuclear FunctionsGenome Research · 2002
  39. Protein domain analysis in the era of complete genomesFEBS Letters · 2001
  40. Genomes in Flux: The Evolution of Archaeal and Proteobacterial Gene ContentGenome Research · 2001
  41. Quod erat demonstrandum?The mystery of experimental validation of apparently erroneous computational analyses of protein sequencesGenome biology · 2001
  42. Novel Protein Domains and Repeats in Drosophila melanogaster : Insights into Structure, Function, and EvolutionGenome Research · 2001
  43. Evolution of tuf genes: ancient duplication, differential loss and gene conversionFEBS Letters · 2001
  44. Charting the Proteomes of Organisms with Unsequenced Genomes by MALDI-Quadrupole Time-of-Flight Mass Spectrometry and BLAST Homology SearchingAnalytical Chemistry · 2001
  45. Frameshift peptide-derived T-cell epitopes: A source of novel tumor-specific antigensInternational Journal of Cancer · 2001
  46. Systematic identification of genes with coding microsatellites mutated in DNA mismatch repair-deficient cancer cellsInternational Journal of Cancer · 2001
  47. Post-translational GPI lipid anchor modification of proteins in kingdoms of life: analysis of protein sequence data from complete genomesProtein Engineering Design and Selection · 2001
  48. TAP (NXF1) Belongs to a Multigene Family of Putative RNA Export Factors with a Conserved Modular ArchitectureMolecular and Cellular Biology · 2000
  49. Predicting Protein Function by Genomic Context: Quantitative Evaluation and Qualitative InferencesGenome Research · 2000
  50. Automated extraction of information in molecular biologyFEBS Letters · 2000