This protocol outlines a MATLAB pipeline converting raw 2D cine MR images into MHA and DICOM formats, facilitating motion analysis in MRgRT.
This protocol describes an in-house MATLAB-based pipeline to convert raw binary files of 2D cine MR images, acquired via the Treatment Session Manager (TSM) on the Elekta Unity MR-Linac system, into readable medical image formats. The software includes automatic renaming, classification by anatomical planes (axial, sagittal, coronal), and conversion into MHA and DICOM formats. The converted images can be used for quantitative geometric and motion analysis during MR-guided radiotherapy (MRgRT).
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Sung et al. (2025) studied this question.
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