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September 10, 2025in silico PlantsOpen Access

axiomFP.py a software for visual ploidy and quality assessment of Axiom SNP array data

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Open-source software improves ploidy diagnostics and quality calling for Axiom SNP arrays, highlighting effectiveness in apple germplasm.

The software accurately assesses ploidy and call quality in Axiom SNP arrays using visual frequency plots.
Validation against ploidy data and flow cytometry shows complete accuracy in results obtained from mixed ploidy apple cultivars.
Frequency plots generated are crucial for visual inspection, ensuring quality assessment and ploidy diagnostics.
AxiomFP.py is available on GitHub, providing tools for file preparation and software operation.

Konjić et al. (2025) studied this question.

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