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September 18, 2025Annals of Laboratory Medicine0 citationsOpen Access

Evaluation of Exosome-derived Small RNAs as Potential Biomarkers for Pancreatic Ductal Adenocarcinoma Using Next-generation Sequencing

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HKHyemin KimSPSabin ParkMGMyung Ji Goh

Key Points

  • Exosome-derived small RNAs (Ex-smRNAs) show significant differences in levels between pancreatic ductal adenocarcinoma patients and controls, impacting prognosis.
  • Findings highlight specific microRNAs, including significantly suppressed miR-125a-5p and elevated miR-6731-5p, which correlate with PDAC progression.
  • Assessment using smRNA sequencing and multivariable Cox regression establishes CARS1-AS1 and miR-142-5p as linked to improved overall survival in PDAC patients.
  • The study suggests potential clinical applications for Ex-smRNAs as biomarkers, contributing to better disease monitoring and targeted therapies.

Abstract

Pancreatic ductal adenocarcinoma (PDAC) has a poor prognosis and lacks clinical biomarkers. Exosomes are extracellular vesicles that facilitate cell-cell communication by distributing macromolecules, such as small RNAs (smRNAs). We assessed the potential of exosome-derived small RNAs (Ex-smRNAs) as PDAC biomarkers. Peripheral blood was collected from 51 patients with PDAC and 15 control individuals. Exosomes were isolated using an aqueous two-phase system. Ex-smRNAs were analyzed using smRNA sequencing. smRNA-mediated target gene regulation was verified via The Cancer Genome Atlas analysis and in vitro transfection and wound-healing assays using PDAC organoids. The total Ex-smRNA count was substantially reduced in patients with PDAC compared with that in control individuals. The levels of microRNAs (miRNAs) miR-125a-5p, miR-30e-5p, miR-16-2-3p, miR-98-5p, and the let-7 family were significantly suppressed, whereas that of miR-6731-5p was significantly elevated. Let-7c-5p and miR-98-5p were found to interact with the long non-coding RNA OLMALINC to regulate their common target genes, BACH1 and CCND1, thus controlling PDAC proliferation and migration. The expressions of CARS1-AS1 and miR-142-5p were upregulated in treatment-responsive patients. Multivariable Cox regression analyses, adjusting for potential prognostic factors such as sex, Eastern Cooperative Oncology Group performance status, and tumor size and stage, revealed that CARS1-AS1 (adjusted hazard ratio HR 0.33; 95% confidence interval CI, 0.15-0.73; P =0.0061) and miR-142-5p (adjusted HR 0.79; 95% CI, 0.61-1.01; P = 0.0581) were associated with improved overall survival. We identified potential Ex-smRNA biomarkers involved in PDAC progression and prognosis that reflect key molecular alterations in PDAC and may serve as clinically relevant biomarkers for disease monitoring.

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Cite This Study

Kim et al. (2025) studied this question.

synapsesocial.com/papers/68d462ca31b076d99fa6208ahttps://doi.org/10.3343/alm.2025.0121
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