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Systematic evaluation reveals large language models outperform BERT in classifying tumor progression, indicating significant potential for clinical data processing.
Abstract Radiology reports, typically recorded as unstructured free text or with varying levels of structuration, contain critical information on tumor evolution but remain difficult to mine for care optimization or research without advanced language processing. We evaluated 15 open-source Large Language Models (LLMs) for classifying tumor evolution from French imaging reports, using a gold-standard corpus of 310 cases. We tested models with varied architecture, hyperparameter configuration and prompting strategy, and compared them with rule-based and BERT-based baselines. We systematically assessed development time and carbon emissions. Properly selected and configured, LLMs outperformed state-of-the-art baselines without requiring large manually annotated datasets, but used substantial computational resources. In contrast, fine-tuned BERT models, trained on high-quality annotations, achieved only slightly lower performance at reduced hardware and computational costs. Our results highlight a trade-off between human annotation effort and computational infrastructure, offering insight for transforming unstructured clinical reports into structured, actionable data.
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Pohyer et al. (2025) studied this question.
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