This tool manages TSE surveillance reports in R Markdown, enabling dynamic edits and word document exports.
In specific contract No 2 issued under the framework agreement OC/EFSA/MESE/2023/03, EFSA requested Open Analytics NV to reproduce the European Union Summary Report on TSE surveillance (TSE report) in R Markdown and implement a web application to manage the R Markdown chapters and generate a Word report from it. The R Markdown is parametrized, tables and figures have been reproduced where applicable. The online tool is based on the R package rmdUI, developed by Open Analytics NV. This package allows users to create versions of the report, load chapters in the online tool, edit (text) paragraphs and finally export the full report to a Word document. Additionally, the online tool provides functions to run a data validation. As well as a tab for admin users to upload/download the raw and derived data.
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Bossier et al. (2025) studied this question.
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