Observational analysis demonstrated reactivity of HMPB linker at low HFIP concentrations in peptide synthesis, highlighting solvent effects.
Hexafluoroisopropanol (HFIP) is widely used as a hydrogen-bond-donor solvent. Here we demonstrate that 4-(4-hydroxymethyl-3-methoxyphenoxy)butyric acid (HMPB), a commonly used linker for generating C-terminal carboxylic acid peptides, cleaves from the solid support at HFIP concentrations as low as 20% in dichloromethane. The resulting yields are comparable to concentrated trifluoroacetic acid cleavage conditions. This reactivity is attributed to an added resonance structure, enabled by a p-methoxy substituent, which potentially stabilizes the benzylic carbocation intermediate during cleavage.
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Desgagné et al. (2025) studied this question.
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