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February 13, 20260 citationsOpen Access

SEPIA: Integrated Sample Metadata for ICAT Facilities

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MSMojeeb Rahman SedeqiKRKatherine RialRKRolf Krahl

Key Points

  • To develop a centralized metadata platform for managing scientific sample information in ICAT-based infrastructures.
  • Developed a FAIR-compliant sample metadata platform called SEPIA.
  • Enabled centralized registration and persistent identification of samples.
  • Implemented provenance tracking for scientific samples across their lifecycle.
  • Integrated through a REST API and web interface for laboratory workflows.
  • SEPIA mints International Generic Sample Numbers (IGSNs) via DataCite.
  • Provides dedicated landing pages and a core citation metadata schema.
  • Supports extensible sample-type specific attributes for enhanced usability.

Abstract

SEPIA (Sample Essentials, Persistent Identifiers & Attributes) is a FAIR-compliant sample metadata platform designed for ICAT-based research infrastructures. It enables centralized registration, persistent identification, and full provenance tracking of scientific samples across their lifecycle. SEPIA mints IGSNs via DataCite, provides dedicated landing pages, and supports a core citation metadata schema with extensible sample-type specific attributes. Through a REST API (OpenAPI) and web interface, it integrates seamlessly into laboratory workflows. Developed as a separate service tightly integrated with ICAT, SEPIA manages full FAIR sample metadata while ICAT retains responsibility for proposals, investigations, and datasets. SEPIA is currently under development at Helmholtz-Zentrum Berlin (HZB) with contributions from the Helmholtz Metadata Collaboration (HMC), in cooperation with DAPHNE4NFDI and the ROCK-IT project.

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Cite This Study

Sedeqi et al. (2026) studied this question.

synapsesocial.com/papers/698ebf3485a1ff6a930166ddhttps://doi.org/10.5281/zenodo.18607762
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