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April 6, 2017BioinformaticsOpen Access

MISA-web: a web server for microsatellite prediction

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Authors

SBSebastian BeierForschungszentrum JülichTTThomas ThielBundeswehrkrankenhausTMThomas A. MünchOptech (Canada)

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Implication

Bioinformatics application demonstrates automated microsatellite identification in genomic datasets, highlighting streamlined simple sequence repeat discovery.

Key Points

  • Develop an accessible web server, MISA-web, to facilitate the prediction and identification of microsatellites directly from genomic sequences.
  • Integrated the MISA (MIcroSAtellite identification tool) algorithm into a browser-based online platform.
  • Established customizable parameter settings to detect simple and compound sequence repeats in uploaded sequence files.
  • Delivers a functional web interface enabling automated detection and analysis of simple sequence repeats without requiring command-line software installations.
  • Outputs standardized coordinate files and statistical summaries to accelerate genetic marker discovery for mapping and population studies.

Cite This Study

Beier et al. (2017) studied this question.

synapsesocial.com/papers/69d6b2e38dca315383ed8915https://doi.org/10.1093/bioinformatics/btx198
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