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October 23, 2020Nucleic Acids Research2,446 citationsOpen Access

The InterPro protein families and domains database: 20 years on

MBMatthias BlumHCHsin-Yu ChangSCSara Chuguransky

Key Points

  • This report aims to summarize the developments and current status of the InterPro database after 20 years of operation.
  • Overview of InterPro database version 81.0 and its features.
  • Updates on database content, software enhancements, and introduction of a REST API.
  • Implementation of performance improvements in the InterProScan software.
  • InterPro remains a leading resource for protein family annotation with upgraded features.
  • Introduction of a new website improving user accessibility.
  • Performance enhancements in InterProScan facilitate more efficient searches of protein sequences.

Abstract

The InterPro database (https://www.ebi.ac.uk/interpro/) provides an integrative classification of protein sequences into families, and identifies functionally important domains and conserved sites. InterProScan is the underlying software that allows protein and nucleic acid sequences to be searched against InterPro's signatures. Signatures are predictive models which describe protein families, domains or sites, and are provided by multiple databases. InterPro combines signatures representing equivalent families, domains or sites, and provides additional information such as descriptions, literature references and Gene Ontology (GO) terms, to produce a comprehensive resource for protein classification. Founded in 1999, InterPro has become one of the most widely used resources for protein family annotation. Here, we report the status of InterPro (version 81.0) in its 20th year of operation, and its associated software, including updates to database content, the release of a new website and REST API, and performance improvements in InterProScan.

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Cite This Study

Blum et al. (2020) studied this question.

synapsesocial.com/papers/69d6b465a0177bf533ed89dchttps://doi.org/10.1093/nar/gkaa977
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