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Summarize continuous developments, new data sets, and software enhancements added to the UCSC Genome Browser database.

November 20, 2015Nucleic Acids ResearchOpen Access

The UCSC Genome Browser database: 2016 update

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Summarize continuous developments, new data sets, and software enhancements added to the UCSC Genome Browser database.
Integrated updated genome assemblies and gene annotations for diverse organisms, including bonobo and zebrafish.
Developed the interactive 'Data Integrator' tool to enable intersection across multiple annotation tracks simultaneously.
Incorporated GENCODE gene predictions, ClinVar and ClinGen disease variants, regulatory marks, and multiple alignments into human assembly hg38/GRCh38.
Released updated assemblies and enhanced track and assembly hub support across multiple model organism genomes.
Expanded human reference assembly hg38/GRCh38 with comprehensive disease-associated variation tracks and new multiple genome alignments.
Enabled interactive multi-track data intersection and extraction directly through the new Data Integrator interface.

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Database report highlights expanded genomic annotations and comparative tools in reference assemblies, facilitating integrated multi-track sequence analysis.

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Speir et al. (2015) studied this question.

synapsesocial.com/papers/69d9a2b62a25b240b7a3d2ec https://doi.org/10.1093/nar/gkv1275

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Implication

Database report highlights expanded genomic annotations and comparative tools in reference assemblies, facilitating integrated multi-track sequence analysis.

The UCSC Genome Browser database: 2016 update

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Implication

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The UCSC Genome Browser database: 2016 update

Key Points

Discussion

Implication

Cite This Study

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