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January 3, 2020Genes Chromosomes and Cancer

Deep sequencing of myxoinflammatory fibroblastic sarcoma

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Key result

Deep sequencing of myxoinflammatory fibroblastic sarcoma revealed that the recurrent t(1;10) translocation likely results in loss of genetic material from 1p and 10q rather than a functional fusion gene.

Why the study?

To investigate the molecular outcome of the t(1;10) translocation and the VGLL3 amplicon, and assess the spectrum of other recurrent genomic features in myxoinflammatory fibroblastic sarcoma.

Population

Myxoinflammatory fibroblastic sarcoma (MIFS) and MIFS-like tumors

Design

Genomic profiling study using WGS, Cap-seq, RNA-seq, and genomic arrays

Authors

EAElsa ArbajianLund UniversityJHJakob HofvanderLund UniversityLMLinda MagnussonLund University

Discussion

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Implication

Challenges fusion gene model in MIFS; leaves open whether 1p/10q loss or VGLL3 drives pathogenesis.

Structured PICO

P
Population
Genomic analysis of myxoinflammatory fibroblastic sarcoma tumors to investigate the molecular outcome of recurrent genetic features.
E
Exposure
Deep sequencing of the genome (WGS), captured sequences (Cap-seq), transcriptome (RNA-seq), and genomic arrays
O
Outcome
Molecular outcome of the t(1;10) and the VGLL3 amplicon, and spectrum of other recurrent genomic featuressurrogate

The recurrent t(1;10) translocation in MIFS likely results in loss of genetic material from 1p and 10q rather than forming functional fusion transcripts, while VGLL3 amplification is a consistent feature.

Cite This Study

Arbajian et al. (2020) studied Myxoinflammatory fibroblastic sarcoma. Deep sequencing (WGS, Cap-seq, RNA-seq) was evaluated on Molecular outcome of the t(1;10) and the VGLL3 amplicon, and spectrum of other recurrent genomic features. Deep sequencing of myxoinflammatory fibroblastic sarcoma revealed that the recurrent t(1;10) translocation likely results in loss of genetic material from 1p and 10q rather than a functional fusion gene.

synapsesocial.com/papers/6a99c5a5fc5523f0a3f1802chttps://doi.org/10.1002/gcc.22832
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Also Consider

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