Genetic Diversity of Circulating Foot and Mouth Disease Virus in Uganda Cross-Sectional Study During 2014–2017

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  Figure 1. FMDV sequencing dataset from Uganda (2014–2017). (A) phylogenetic analysis conducted by maximum likelihood method, showing the genetic diversity of the FMDV sequencing dataset reported in this article. Multiple reference sequences from each serotype previously described by Knowles et al. (2) were included for this analysis. Branches in red represents specific topotypes associated with the sequences reported in this database. (B) Homology from each serotype at nucleotide and amino acid levels was deduced by pairwise distance analysis. In case of serotypes 0, SAT 1, and SAT 2 pairwise distance was calculated between different topotypes, thus explaining the disparate amino acid homology displayed between these serotypes. Analysis were conducted on the software MEGA 10.0.5.