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March 28, 2011Molecules and CellsOpen Access

Phylogenomics and Molecular Evolution of Foot-and-Mouth Disease Virus

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Key result

Bayesian coalescent analysis dates the FMDV most recent common ancestor to ~481 years ago.

  • n=217

Why the study?

The genome-wide phylogeny and molecular evolution mechanisms of foot and mouth disease virus (FMDV) were not fully defined using comprehensive sequence data.

Population

217 polyprotein coding region sequences of FMDV from GenBank

Comparison

Phylogenetic relationships among FMDV serotypes using Bayesian methods

Design

Bayesian phylogenomic and molecular evolutionary analysis

Authors

WPWoncheoul ParkRural Development AdministrationDKDonald P. KingMarine Mammal CenterHKHeebal KimSeoul National University

Discussion

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Implication

Offers FMDV evolutionary baseline; leaves open utility for outbreak modeling and vaccine updates in livestock.

Structured PICO

P
Population
217 polyprotein coding region sequences of foot-and-mouth disease virus representing all seven serotypes obtained from GenBank for phylogenomic analysis.
E
Exposure
Bayesian methods for phylogenetic analysis
O
Outcome
Genome-wide phylogeny and evolutionary rate of FMDV

Bayesian phylogenetic analysis reveals the evolutionary rate and population dynamics of foot-and-mouth disease virus, providing insights into its molecular evolution.

Limitations

  • Limited historical sequences available for Bayesian skyline plot analysis

Cite This Study

Park et al. (2011) studied Foot-and-Mouth Disease Virus (n=217). Bayesian coalescent analysis was evaluated on Evolutionary rate of FMDV isolates. Bayesian coalescent analysis estimated the evolutionary rate of FMDV to be 1.46 × 10^-3 substitutions/site/year, with the most recent common ancestor existing approximately 481 years ago.

synapsesocial.com/papers/6aac9a2428dacefbf66e03dehttps://doi.org/10.1007/s10059-011-0249-6
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Also Consider

Synapse has enriched 5 closely related papers on similar clinical questions. Consider them for comparative context:

  1. 1MRBAYES: Bayesian inference of phylogenetic trees2001 · 22,349 citations
  2. 2Molecular Epidemiology of the Foot-and-Mouth Disease Virus Outbreak in the United Kingdom in 20012006 · 171 citations
  3. 3Comparative Genomics of Foot-and-Mouth Disease Virus2005 · 512 citations
  4. 4BEAST: Bayesian evolutionary analysis by sampling trees2007 · 13,235 citations
  5. 5MODELTEST: testing the model of DNA substitution.1998 · 20,110 citations