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March 25, 2019Nucleic Acids ResearchOpen Access

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

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Authors

ILIvica LetunićEuropean Molecular Biology Organization
Peer Bork
Peer BorkUniversité Claude Bernard Lyon 1

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Implication

Software platform update reports expanded dataset types and programmatic batch access in iTOL v4, highlighting enhanced phylogenetic visualization.

Key Points

  • To introduce the latest features, dataset types, and usability improvements implemented in version 4 of the Interactive Tree Of Life (iTOL) platform.
  • Implemented an in-browser spreadsheet-like dataset editor and added full UTF-8 character encoding along with Google Web Fonts support.
  • Developed direct visualization pipelines for Qiime 2 phylogenetic trees and programmatic batch access for tree uploads and exports.
  • Introduced four new dataset formats, expanded visual customization options, and provided first-of-its-kind direct visualization for Qiime 2 trees.
  • Scaled user management infrastructure to support over 700,000 uploaded trees from more than 40,000 registered individual users.

Cite This Study

Letunić et al. (2019) studied this question.

synapsesocial.com/papers/69d76b2bb4cef8fedc48fd7dhttps://doi.org/10.1093/nar/gkz239
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Also Consider

Synapse has enriched 5 closely related papers on similar clinical questions. Consider them for comparative context:

  1. 1Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks2012 · 1,766 citations
  2. 2Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees2016 · 5,535 citations
  3. 3How and Why to Build a Unified Tree of Life2017 · 53 citations
  4. 4MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets2016 · 46,342 citations
  5. 5Tree View: An application to display phylogenetic trees on personal computers1996 · 10,247 citations