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April 14, 2025Frontiers in Cardiovascular MedicineOpen Access

Identification of signature genes and subtypes for heart failure diagnosis based on machine learning

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Key result

Machine learning identifies 4 transcriptomic hub genes with good diagnostic potential for HF.

  • AUC > 0.7
  • P=1.3 x 10^-43

Why the study?

Comprehension of the genetic pathogenesis of heart failure remains significantly limited, and identifying specific transcriptomic genes may enhance early detection and targeted therapies.

Population

Heart failure datasets from the Gene Expression Omnibus database and The Cancer Genome Atlas

Design

Bioinformatics and machine-learning diagnostic and clustering study

Authors

YZYanlong ZhangYFYanming FanFCFei Cheng

Discussion

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Member takes

Overview

These genes should not yet inform heart failure diagnostics; leaves open prospective validation in clinical cohorts.

Structured PICO

P
Population
Heart failure datasets from the Gene Expression Omnibus (GEO) database (GSE57338, GSE21610, GSE76701) and The Cancer Genome Atlas pan-cancer database
I
Intervention
Bioinformatics and machine-learning algorithms (random forest, least absolute shrinkage and selection operator, and support vector machine)
O
Outcome
Identification of diagnostic candidate genes for heart failuresurrogate

Main Result

Effect estimate: AUC > 0.7

p-value: p=1.3 x 10^-43

Machine learning analysis of public transcriptomic datasets identified four novel genes (FCN3, FREM1, MNS1, SMOC2) as potential diagnostic biomarkers for heart failure.

Cite This Study

Zhang et al. (2025) studied Heart failure. Machine learning algorithms was evaluated on Diagnostic potential of hub genes for heart failure (AUC > 0.7, p=1.3 x 10^-43). Machine learning analysis of transcriptomic datasets identified four hub genes (FCN3, FREM1, MNS1, and SMOC2) with good diagnostic potential for heart failure (AUC > 0.7).

synapsesocial.com/papers/6a1111a2076612a7a7169bb2https://doi.org/10.3389/fcvm.2025.1492192
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Also Consider

Synapse has enriched 5 closely related papers on similar clinical questions. Consider them for comparative context:

  1. 1Identification of biomarkers and immune microenvironment associated with heart failure through bioinformatics and machine learning2025 · 8 citations
  2. 2Identification of potential candidate genes and dysregulated mechanisms of heart failure2022
  3. 3Uncovering hub genes and immunological characteristics for heart failure utilizing RRA, WGCNA and Machine learning2024 · 9 citations
  4. 4Identification of candidate biomarkers and therapeutic agents for heart failure by bioinformatics analysis2021 · 54 citations
  5. 5Uncovering key biomarkers, potential therapeutic targets and development of deep learning model in heart failure2025 · 1 citations