May 24, 2023VirusesOpen Access

Genomic Epidemiology of SARS-CoV-2 in Urban Settings in Senegal

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Population

291 genotypable consensus genome sequences from positive nasopharyngeal samples in urban Senegal

Design

Genomic epidemiology study

Authors

ANAnna Julienne Selbé NdiayeMéditerranée Infection Foundation MBMamadou BeyeMéditerranée Infection Foundation GLGora LôHôpital Principal de Dakar

Discussion

Member takes

Overview

Genomic surveillance in Senegal during peak COVID-19; extends regional variant tracking but leaves open clinical implications.

Structured PICO

Population

Nasopharyngeal samples testing positive for SARS-CoV-2 in urban settings in Senegal from March to April 2021 (n=291 genotypable consensus genome sequences)

Intervention

Whole genome sequencing using the Illumina NovaSeq 6000 sequencing system and COVIDSeq protocol

Comparator

Wuhan reference genome (for SNP identification)

Outcome

Identification and analysis of SARS-CoV-2 mutations and lineagessurrogate

The study highlights substantial SARS-CoV-2 diversification in Senegal during the March-April 2021 wave, including the first detection of a strain belonging to the P.1.14 sublineage.

Cite This Study

Ndiaye et al. (2023) studied this question.

synapsesocial.com/papers/6a8c7229e2daec1d82d3caa1 https://doi.org/10.3390/v15061233

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May 24, 2023VirusesOpen Access

Genomic Epidemiology of SARS-CoV-2 in Urban Settings in Senegal

View Full Paper

Ask AI

Bookmark

Population

291 genotypable consensus genome sequences from positive nasopharyngeal samples in urban Senegal

Design

Genomic epidemiology study

Authors

ANAnna Julienne Selbé NdiayeMéditerranée Infection Foundation MBMamadou BeyeMéditerranée Infection Foundation GLGora LôHôpital Principal de Dakar

Discussion

Member takes

Overview

Genomic surveillance in Senegal during peak COVID-19; extends regional variant tracking but leaves open clinical implications.

Structured PICO

Population

Nasopharyngeal samples testing positive for SARS-CoV-2 in urban settings in Senegal from March to April 2021 (n=291 genotypable consensus genome sequences)

Intervention

Whole genome sequencing using the Illumina NovaSeq 6000 sequencing system and COVIDSeq protocol

Comparator

Wuhan reference genome (for SNP identification)

Outcome

Identification and analysis of SARS-CoV-2 mutations and lineagessurrogate

The study highlights substantial SARS-CoV-2 diversification in Senegal during the March-April 2021 wave, including the first detection of a strain belonging to the P.1.14 sublineage.

Cite This Study

Ndiaye et al. (2023) studied this question.

synapsesocial.com/papers/6a8c7229e2daec1d82d3caa1 https://doi.org/10.3390/v15061233

Also Consider

Synapse has enriched 4 closely related papers on similar clinical questions. Consider them for comparative context:

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