Key result
Whole genome sequencing of 73 African swine fever virus samples from the 2021 Dominican Republic outbreak revealed high nucleotide identity to Eurasian strains but with at least 8 novel SNPs.
Why the study?
A new outbreak of African swine fever virus occurred in the Dominican Republic, which had been declared free of the disease since 1981.
Observational (n=73)
Yes
Genomic analysis of the 2021 African swine fever outbreak in the Dominican Republic identified a strain closely related to Eurasian variants but with 8 novel mutations.
Signals potential local ASFV adaptation in the Americas; leaves open effects on virulence, transmissibility, and control measures.
African swine fever (ASF) is a high-consequence transboundary disease of domestic and wild swine often characterized by high case mortality rates. On July 29, 2021, the Dominican Republic announced the African swine fever virus (ASFV) had been detected in samples collected in early- to mid-July 2021. Retrospective testing of samples collected as part of a collaborative surveillance project between the United States and the Dominican Republic identified ASFV in samples collected as early as May 13, 2021. These detections represent a new outbreak of ASF in the Dominican Republic, which had been declared free of the disease since 1981. Overall, 73 whole genomes of ASFV were sequenced from clinical samples received during the outbreak across 18 provinces. The genomic sequence data have been deposited in public databases to support and expand global data sharing on this impactful disease. While the sequences show a high degree of nucleotide identity to publicly available ASFV genomes from Europe and Asia, they are genetically distant from genomes in the public repositories by at least 8 previously undescribed single nucleotide polymorphisms.
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Lakin et al. (2022) conducted an observational in African swine fever (n=73). Whole genome sequencing vs. Publicly available ASFV genomes from Europe and Asia was evaluated on Genomic sequence identity and single nucleotide polymorphisms. Whole genome sequencing of 73 African swine fever virus samples from the 2021 Dominican Republic outbreak revealed high nucleotide identity to Eurasian strains but with at least 8 novel SNPs.
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