Key result
Dominican Republic African swine fever genomes show high Eurasian similarity alongside 8 novel SNPs.
Why the study?
A new outbreak of African swine fever occurred in the Dominican Republic in 2021 after the country had been declared free of the disease since 1981.
Observational (n=73)
Yes
Whole genome sequencing of the 2021 ASFV outbreak in the Dominican Republic identified 8 novel SNPs compared to European and Asian strains, aiding global genomic surveillance.
Supports ASFV genomic surveillance in the Americas; leaves open functional impacts of novel SNPs on virulence and spread.
African swine fever (ASF) is a high-consequence transboundary disease of domestic and wild swine often characterized by high case mortality rates. On July 29, 2021, the Dominican Republic announced the African swine fever virus (ASFV) had been detected in samples collected in early- to mid-July 2021. Retrospective testing of samples collected as part of a collaborative surveillance project between the United States and the Dominican Republic identified ASFV in samples collected as early as May 13, 2021. These detections represent a new outbreak of ASF in the Dominican Republic, which had been declared free of the disease since 1981. Overall, 73 whole genomes of ASFV were sequenced from clinical samples received during the outbreak across 18 provinces. The genomic sequence data have been deposited in public databases to support and expand global data sharing on this impactful disease. While the sequences show a high degree of nucleotide identity to publicly available ASFV genomes from Europe and Asia, they are genetically distant from genomes in the public repositories by at least 8 previously undescribed single nucleotide polymorphisms.
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Lakin et al. (2022) conducted an observational in African swine fever (n=73). Whole genome sequencing vs. Publicly available ASFV genomes from Europe and Asia was evaluated on Genomic sequence identity and single nucleotide polymorphisms. Whole genome sequencing of 73 African swine fever virus samples from the 2021 Dominican Republic outbreak revealed high nucleotide identity to Eurasian genomes but with at least 8 novel SNPs.
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