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August 16, 2026Journal of Translational MedicineOpen Access

Longitudinal metagenomic profiling of gut microbiome dynamics in B-cell lymphoma patients receiving CAR-T cell therapy

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Authors

ZJZimo JiaMinistry of EducationPZPeixian ZhengPeking UniversityHZHaoxuan ZhangPeking University

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Implication

Longitudinal study reveals gut microbiome remodeling linked to treatment response and cytokine release syndrome in B-cell lymphoma, highlighting pre-infusion microbial markers of CAR-T outcomes.

Key Points

  • To evaluate peri-infusion gut microbiome remodeling and determine its association with clinical response and immune-related toxicities in B-cell lymphoma patients receiving CAR-T cell therapy.
  • Conducted shotgun metagenomic sequencing on 103 fecal samples from 21 patients with B-cell lymphoma at five timepoints (days −7, 0, 7, 14, and 28 relative to CAR-T infusion).
  • Analyzed longitudinal taxonomic dynamics and baseline stability using mixed-effects models and centered log-ratio transformations with false discovery rate correction.
  • Evaluated day −7 clinical and microbial features using exploratory nested cross-validation to predict therapeutic response and cytokine release syndrome.
  • CAR-T infusion induced early, patient-specific gut microbiome remodeling marked by a transient reduction in alpha diversity and compositional divergence from baseline.
  • Baseline microbial diversity, overall community structure, and Sutterella and Segatella abundance differed between responders and non-responders, while lower baseline diversity associated with cytokine release syndrome but not neurotoxicity.
  • Nested cross-validation models achieved AUCs of 0.51 (clinical), 0.55 (microbiome), and 0.72 (combined) for response prediction, and 0.44 (clinical), 0.85 (microbiome), and 0.83 (combined) for cytokine release syndrome prediction.

Cite This Study

Jia et al. (2026) studied this question.

synapsesocial.com/papers/6a81794cf2fb91fc834ac7b4https://doi.org/10.1186/s12967-026-08814-7
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Also Consider

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  1. 1Microbiome and metabolite biomarkers of CAR T-cell therapy outcomes in relapsed/refractory diffuse large B-cell lymphoma2025 · 5 citations
  2. 2Multi-faceted influence of immunomodulatory metabolites on CAR-T cell therapy2025
  3. 3The Gut Microbiome Drives Endogenous T-cell Activation Following CAR T-cell Therapy2026
  4. 4Immune landscape characterization of relapsed/refractory B-cell lymphoma patients treated with CD19 CAR-T cell therapy2025
  5. 5Impact of antibiotic exposure on CAR-T cell therapy outcomes: Analysis in multiple Myeloma and lymphoma2025